SUBTYPING
- SCFA: subtyping and risk prediction
– GitHub: https://github.com/duct317/SCFA
– Bioconductor: https://bioconductor.org/packages/SCFA/ - PINSPlus: subtyping and big data analysis
– CRAN: https://CRAN.R-project.org/package=PINSPlus - SMRT: subtyping and big data analysis
– Web application: http://smrt.tinnguyen-lab.com/
DATABASE
- FAT-PTM: examining post-translational modification in plants
– Web application: https://bioinformatics.cse.unr.edu/fat-ptm/
PATHWAY ANALYSIS
- CPA: Consensus pathway analysis and interactive pathway visualization
– Web application: https://bioinformatics.cse.unr.edu/software/cpa/ - BLMA: a suit of tools for bi-level meta-analysis
– Bioconductor: https://bioconductor.org/packages/release/bioc/html/BLMA.html
SINGLE-CELL ANALYSIS
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scISR: A novel method for single-cell data imputation using subspace regression
– Publication: https://www.nature.com/articles/s41598-022-06500-4
– Github: https://github.com/duct317/scISR -
scDHA: Fast and precise single-cell data analysis using a hierarchical autoencoder
– Publication: https://www.nature.com/articles/s41467-021-21312-2
– CRAN: https://cran.r-project.org/web/packages/scDHA/