- This is the instruction to execute the scripts provided with the manuscript.

- In order to run the code, we need to have Docker installed in your system.
The installation instruction of Docker is avaialble at the following link:

  https://docs.docker.com/get-docker/

- After the installation process is done, please download the docker image and the
scripts using the link follow:

- http://sccan.tinnguyen-lab.com/

- The docker contains all the necessary libraries to reprodue the results reported in the manuscript. To load the docker image please go to the folder that
contains the docker image and use the following command:

docker load <sccan.tar

- To run the docker with a mounted folder that contains data and script, please use the following command:

docker run -t -i --mount type=bind,src=<your source folder path>,dst=<Your destination folder path> sccan bash

- The docker will start with terminal, and we need to navigate to the folder that contain the data and scripts. To test R scripts please use the folowing command:

Rscript <Your script>

- To run the python script, please use the following command:

python3 <Your script>