scDHA
The scDHA package is a complete pipeline for single-cell RNA sequencing (scRNA-seq) analysis. scDHA supports various analyses:
- Clustering
- Dimension reduction
- Visualization
- Cell classification
- Time-trajectory inference
To start using scDHA, follow the installation instruction here. A tutorial on how to use scDHA for scRNA-seq analysis can be found here.
Duc Tran, Hung Nguyen, Bang Tran, Carlo La Vecchia, Hung N. Luu, Tin Nguyen (2021). Fast and precise single-cell data analysis using a hierarchical autoencoder. Nature Communications, 12, 1029. doi: 10.1038/s41467-021-21312-2 (link)