scDHA

Getting started

The scDHA package is a complete pipeline for single-cell RNA sequencing (scRNA-seq) analysis. scDHA supports various analyses:

Clustering
Dimension reduction
Visualization
Cell classification
Time-trajectory inference

To start using scDHA, follow the installation instruction here. A tutorial on how to use scDHA for scRNA-seq analysis can be found here.

Reference

Duc Tran, Hung Nguyen, Bang Tran, Carlo La Vecchia, Hung N. Luu, Tin Nguyen (2021). Fast and precise single-cell data analysis using a hierarchical autoencoder. Nature Communications, 12, 1029. doi: 10.1038/s41467-021-21312-2 (link)